PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Traes_5DS_268147383.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Pooideae; Triticodae; Triticeae; Triticinae; Triticum
Family YABBY
Protein Properties Length: 206aa    MW: 22603.5 Da    PI: 9.3455
Description YABBY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Traes_5DS_268147383.1genomeIWGSCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1YABBY229.86.7e-7191796170
                  YABBY   6 sseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasql.laaeshldeslkee.......lleelkveeenlksn 85 
                             +eqvCyv+CnfCnt+lavsvP +s++++vtvrCGhCt+llsv+l+ +++  ++   +++es   +       + ++   ++ ++ s 
  Traes_5DS_268147383.1   9 PAEQVCYVHCNFCNTVLAVSVPGNSMLNIVTVRCGHCTNLLSVSLRGQMHSpVPPAAQVQESSLSKpngsngfIRDHSVYNSPEFGS- 95 
                            689******************************************987754256666677776666344444333333333333333. PP

                  YABBY  86 vekeesastsvsseklsenedeevprvpp.virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170
                              +++s+s++ ++ ++  ++++++ + +    rPPekrqrvPsaynrfikeei+rika+nPdishreafs+aaknWah+P+ihfgl
  Traes_5DS_268147383.1  96 --SSSSSSSKFRMPTMMFSSQNDLLQEQTlHARPPEKRQRVPSAYNRFIKEEIRRIKANNPDISHREAFSTAAKNWAHYPNIHFGL 179
                            ..333334444444444455555554444379****************************************************97 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF046906.5E-739179IPR006780YABBY protein
SuperFamilySSF470952.75E-8124173IPR009071High mobility group box domain
Gene3DG3DSA:1.10.30.103.1E-5126173IPR009071High mobility group box domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007275Biological Processmulticellular organism development
Sequence ? help Back to Top
Protein Sequence    Length: 206 aa     Download sequence    Send to blast
MSSSGQIAPA EQVCYVHCNF CNTVLAVSVP GNSMLNIVTV RCGHCTNLLS VSLRGQMHSP  60
VPPAAQVQES SLSKPNGSNG FIRDHSVYNS PEFGSSSSSS SSKFRMPTMM FSSQNDLLQE  120
QTLHARPPEK RQRVPSAYNR FIKEEIRRIK ANNPDISHRE AFSTAAKNWA HYPNIHFGLN  180
PERDGGKRLA VDDAAPAAKK IQGFCS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0091060.0BT009106.1 Triticum aestivum clone wkm2n.pk008.p10:fis, full insert mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_003577246.14e-98PREDICTED: protein YABBY 6 isoform X1
SwissprotQ2QM171e-96YAB6_ORYSJ; Protein YABBY 6
TrEMBLW5G1Q51e-154W5G1Q5_WHEAT; Uncharacterized protein
STRINGMLOC_66260.11e-135(Hordeum vulgare)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP139437121
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G26580.23e-59YABBY family protein
Publications ? help Back to Top
  1. Brenchley R, et al.
    Analysis of the bread wheat genome using whole-genome shotgun sequencing.
    Nature, 2012. 491(7426): p. 705-10
    [PMID:23192148]